gatk 3.8 best practices utilizing sentieon’s dnaseq pipeline v201808.03 (Sentieon Inc)

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Sentieon Inc gatk 3.8 best practices utilizing sentieon’s dnaseq pipeline v201808.03
Gatk 3.8 Best Practices Utilizing Sentieon’s Dnaseq Pipeline V201808.03, supplied by Sentieon Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/sentieon+dnaseq+pipeline/sentieon+v201808+07/10__1161_slash_jaha__124__038341-88-0-5
Average 90 stars, based on 1 article reviews

gatk 3.8 best practices utilizing sentieon’s dnaseq pipeline v201808.03 - by Bioz Stars, 2026-10

90/100 stars

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Variant Assay:

Article Title: Construction of the Red Swamp Crayfish ( Procambarus clarkii ) Family Selection Population and Whole Genome Sequencing to Screen WIPFI Candidate Genes Related to Growth.
Article Snippet: .. Then, the Sentieon DNAseq pipeline (version 202112.06) was used to conduct variant calling, based on following functions: “sentieon bwa mem” function was applied to align reads to the reference genome, “--algo LocusCollector” and “--algo Dedup” functions were applied to remove duplicate reads, “--algo Haplotyper” function was used to call variants in GVCF format, and “--algo GVCFtyper” function was used to conduct joint calling by combining GVCFs across all samples and generated a population VCF [30]. ..

Article Title: Whole Exome Sequencing to Find Candidate Variants for the Prediction of Kidney Transplantation Efficacy.
Article Snippet: The end result read out was aligned to the human reference genome from 2013 (GRCh38/hg38) Sentieon BWA (Sentieon, Mountain View, CA, USA). .. The final reads and variant labeling were valued using the Sentieon DNAseq pipeline [11]. ..

Article Title: Construction of the Red Swamp Crayfish ( Procambarus clarkii ) Family Selection Population and Whole Genome Sequencing to Screen WIPFI Candidate Genes Related to Growth
Article Snippet: .. Then, the Sentieon DNAseq pipeline (version 202112.06) was used to conduct variant calling, based on following functions: “sentieon bwa mem” function was applied to align reads to the reference genome, “--algo LocusCollector” and “--algo Dedup” functions were applied to remove duplicate reads, “--algo Haplotyper” function was used to call variants in GVCF format, and “--algo GVCFtyper” function was used to conduct joint calling by combining GVCFs across all samples and generated a population VCF [ ]. ..

Generated:

Article Title: Construction of the Red Swamp Crayfish ( Procambarus clarkii ) Family Selection Population and Whole Genome Sequencing to Screen WIPFI Candidate Genes Related to Growth
Article Snippet: .. Then, the Sentieon DNAseq pipeline (version 202112.06) was used to conduct variant calling, based on following functions: “sentieon bwa mem” function was applied to align reads to the reference genome, “--algo LocusCollector” and “--algo Dedup” functions were applied to remove duplicate reads, “--algo Haplotyper” function was used to call variants in GVCF format, and “--algo GVCFtyper” function was used to conduct joint calling by combining GVCFs across all samples and generated a population VCF [ ]. ..

Labeling:

Isolation:

Article Title: Haplogroup Structure and Genetic Variation Analyses of Mitochondrial Genome SNPs in the Iranian Population
Article Snippet: .. MtDNA sequences were isolated from these individuals, and variants were called using the Sentieon DNAseq pipeline. ..

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